1E8C
Structure of MurE the UDP-N-acetylmuramyl tripeptide synthetase from E. coli
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM14 |
Synchrotron site | ESRF |
Beamline | BM14 |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 1999-11-15 |
Detector | MARRESEARCH |
Wavelength(s) | 0.9791,0.9790,0.8550,0.93 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 93.465, 99.690, 236.146 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.730 - 2.000 |
R-factor | 0.202 |
Rwork | 0.202 |
R-free | 0.23000 |
Structure solution method | MAD |
RMSD bond length | 0.006 |
RMSD bond angle | 23.500 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.700 | 2.130 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.066 * | 0.220 * |
Total number of observations | 323548 * | |
Number of reflections | 72674 * | |
Completeness [%] | 98.3 | 91.2 |
Redundancy | 4.5 | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 7.5 | HANGING DROP EXPERIMENT RESERVOIR: 13% PEG MME 5K, 0.5M LICL, 10% ISOPROPANOL, 0.1M HEPES PH 7.5, 5MM DTT, 1MM UDP-TRIPEPTIDE DROP: 2UL PROTEIN SOLUTION (MURE @ 10MGML-1 IN 20MM HEPES PH 7.5, 200MM NACL, 5MM DTT) WITH 2UL RESERVOIR SOLUTION. |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
10 | 1 | reservoir | dithiothreitol | 5 (mM) | |
2 | 1 | drop | HEPES | 20 (mM) | |
3 | 1 | drop | 200 (mM) | ||
4 | 1 | drop | dithiothreitol | 5 (mM) | |
5 | 1 | drop | UMT | 1 (mM) | |
6 | 1 | reservoir | HEPES | 0.1 (M) | |
7 | 1 | reservoir | PEG MME5000 | 13 (%) | |
8 | 1 | reservoir | 0.5 (M) | ||
9 | 1 | reservoir | iso-propanol | 10 (%) |