1E7D
Endonuclease VII (ENDOVII) Ffrom Phage T4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | ENRAF-NONIUS |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1999-01-15 |
Detector | MARRESEARCH |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.900, 37.400, 74.000 |
Unit cell angles | 90.00, 108.20, 90.00 |
Refinement procedure
Resolution | 27.000 * - 2.800 |
R-factor | 0.245 * |
Rwork | 0.245 |
R-free | 0.31500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1e7l |
RMSD bond length | 0.011 * |
RMSD bond angle | 2.300 * |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | AMoRE |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.281 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.096 * | 0.283 * |
Total number of observations | 28458 * | |
Number of reflections | 8966 | |
<I/σ(I)> | 7.2 | 3.2 |
Completeness [%] | 99.8 | 99.7 |
Redundancy | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.2 | 4 * | HANGING DROP VAPOUR DIFFUSION DROP SIZE: 1 + 1 UL PROTEIN SOLUTION: 16 MG/ML ENDOVII, 175 MM NACL, 20 MM MGCL2, 2 MM ZNCL2, 10 MM 2-MERCAPTO-ETHANOL, 10 % GLYCEROL, 10 MM MOPS PH6.5. WELL: 16-18% PEG 5000 MME, 200 MM CACL2, 20 MM AMMONIUM SULPHATE, 10 MM 2-MERCAPTO-ETHANOL, 100 MM TRIS PH 8.2, C.A. 1 MM SODIUM AZIDE |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 16 (mg/ml) | |
2 | 1 | reservoir | PEG2000 MME | 18 (%(w/v)) | |
3 | 1 | reservoir | Tris | 100 (mM) | |
4 | 1 | reservoir | 200 (mM) | ||
5 | 1 | reservoir | ammonium sulfate | 5 (mM) | |
6 | 1 | reservoir | 5 (mM) | ||
7 | 1 | reservoir | beta-mercaptoethanol | 10 (mM) |