Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1DXC

CO complex of Myoglobin Mb-YQR at 100K

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X12C
Synchrotron siteNSLS
BeamlineX12C
Temperature [K]100
Detector technologyCCD
Collection date1998-05-15
DetectorPRINCETON SCIENTIFIC
Spacegroup nameP 6
Unit cell lengths90.610, 90.610, 45.330
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution19.600 - 1.400
R-factor0.129

*

Rwork0.128
R-free0.15300

*

Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.014
RMSD bond angle2.545
Data reduction softwareXDS
Data scaling softwareXSCALE
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.6001.500
High resolution limit [Å]1.4001.400
Rmerge0.036

*

0.125

*

Total number of observations143218

*

Number of reflections405187138

*

<I/σ(I)>19.83.6
Completeness [%]96.591.4
Redundancy3.52.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

8.7

*

21

*

PROTEIN WAS CRYSTALLIZED FROM 3.6 M AMMONIUM SULFATE.CRYSTALS WERE SOAKED FOR C.A. 1 HOUR IN A THOROUGHLY DEGASSED AND CO SATURATED CRYOPROTECTANT SOLUTION MADE BY ADDITION OF 100 MG XYLITOL, 100 MG GLUCOSE AND 8 MG NA-DITHIONATE TO 1 ML OF 70% SATURATED AMMONIUM SULFATE WITH 50 MM TRIS.HCL PH 9.0. DISTINCT COLOR CHANGES INDICATED THE FORMATION OF CO-MB FROM MET-MB.
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein1 (mM)
21reservoirammonium sulfate2.7 (M)
31reservoirTris-HCl20 (mM)
41reservoirEDTA1 (mM)

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon