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1DC0

CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATG

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS
Synchrotron siteNSLS
Temperature [K]110
Detector technologyAREA DETECTOR
Spacegroup nameP 41 21 2
Unit cell lengths40.197, 40.197, 77.336
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 1.300
R-factor0.172
Rwork0.168
R-free0.20000

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Structure solution methodSIRAS BASED ON THE IODINATED SEQUENCE D(CAT(IODO-G)GGCCCATG)
RMSD bond length0.007
RMSD bond angle0.016
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareDM
Refinement softwareSHELXL-97
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0001.350
High resolution limit [Å]1.3001.300
Rmerge0.070

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0.173

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Total number of observations128129

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Number of reflections16111

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<I/σ(I)>43.6
Completeness [%]98.6

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90

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Redundancy13
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP74

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2.3MM DUPLEX DNA, 120 MM CALCIUM ACETATE, 4.8 MM SPERMINE, 60 MM SODIUM CACODYLATE BUFFER, PH 7.0, 9.5% MPD IN DROP, 25% MPD IN RESERVOIR, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111CALCIUM ACETATE
211SPERMINE
311SODIUM CACODYLATE
411MPD
512MPD
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropduplex DNA2.3 (mM)
21dropCa-acetate120 (mM)
31dropspermine4.8 (mM)
41dropNa cacodylate60 (mM)
51drop9.5 (%(v/v))
61reservoirMPD25 (%(v/v))

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PDB entries from 2024-04-17

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