Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1D4P

CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH 5-AMIDINOINDOLE-4-BENZYLPIPERIDINE INHIBITOR

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]295
Detector technologyIMAGE PLATE
Collection date1997-01-01
DetectorRIGAKU RAXIS IIC
Spacegroup nameC 1 2 1
Unit cell lengths71.560, 72.060, 73.220
Unit cell angles90.00, 101.20, 90.00
Refinement procedure
Resolution20.000 - 2.070
R-factor0.184
Rwork0.184
R-free0.23100
RMSD bond length0.009
RMSD bond angle26.420

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareX-PLOR (98.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.110
High resolution limit [Å]2.0702.070
Rmerge0.0650.253
Total number of observations110072

*

Number of reflections21650
<I/σ(I)>18.43.6
Completeness [%]97.399.4
Redundancy2.72.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION5.64

*

30% PEG 4000, 150 mM sodium citrate, 200 mM ammonium acetate, pH 5.6, VAPOR DIFFUSION, temperature 277K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein6 (mg/ml)
21reservoirsodium citrate150 (mM)
31reservoirPEG400030 (%)
41reservoirammonium acetate200 (mM)

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon