1D4P
CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH 5-AMIDINOINDOLE-4-BENZYLPIPERIDINE INHIBITOR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 295 |
Detector technology | IMAGE PLATE |
Collection date | 1997-01-01 |
Detector | RIGAKU RAXIS IIC |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 71.560, 72.060, 73.220 |
Unit cell angles | 90.00, 101.20, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.070 |
R-factor | 0.184 |
Rwork | 0.184 |
R-free | 0.23100 |
RMSD bond length | 0.009 |
RMSD bond angle | 26.420 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | X-PLOR (98.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.110 |
High resolution limit [Å] | 2.070 | 2.070 |
Rmerge | 0.065 | 0.253 |
Total number of observations | 110072 * | |
Number of reflections | 21650 | |
<I/σ(I)> | 18.4 | 3.6 |
Completeness [%] | 97.3 | 99.4 |
Redundancy | 2.7 | 2.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.6 | 4 * | 30% PEG 4000, 150 mM sodium citrate, 200 mM ammonium acetate, pH 5.6, VAPOR DIFFUSION, temperature 277K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 6 (mg/ml) | |
2 | 1 | reservoir | sodium citrate | 150 (mM) | |
3 | 1 | reservoir | PEG4000 | 30 (%) | |
4 | 1 | reservoir | ammonium acetate | 200 (mM) |