1C8H
CANINE PARVOVIRUS STRAIN D EMPTY CAPSID STRUCTURE AT PH 5.5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1999-01-15 |
Detector | ADSC QUANTUM 4 |
Spacegroup name | P 1 |
Unit cell lengths | 254.493, 253.601, 452.044 |
Unit cell angles | 77.48, 74.91, 69.27 |
Refinement procedure
Resolution | 9.000 - 3.500 |
R-factor | 0.26 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.688 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | GLRF |
Refinement software | CNS (0.5) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.590 |
High resolution limit [Å] | 3.500 | 3.500 |
Rmerge | 0.095 | 0.121 |
Number of reflections | 812178 | |
<I/σ(I)> | 4.4 | |
Completeness [%] | 63.7 | 40.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 7.5 * | 19 * | 0.75-1.5% PEG8000, 8 mM CaCl2, 20 mM Bis-Tris pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | virus | 10 (mg/ml) | |
2 | 1 | drop | Bis-Tris | 20 (mM) | |
3 | 1 | drop | Tris-HCl | 20 (mM) | |
4 | 1 | reservoir | PEG8000 | 0.75-1.50 (%) | |
5 | 1 | reservoir | 8 (mM) | or 5mM EDTA |