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1C8H

CANINE PARVOVIRUS STRAIN D EMPTY CAPSID STRUCTURE AT PH 5.5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F1
Synchrotron siteCHESS
BeamlineF1
Temperature [K]100
Detector technologyCCD
Collection date1999-01-15
DetectorADSC QUANTUM 4
Spacegroup nameP 1
Unit cell lengths254.493, 253.601, 452.044
Unit cell angles77.48, 74.91, 69.27
Refinement procedure
Resolution9.000 - 3.500
R-factor0.26
RMSD bond length0.011
RMSD bond angle1.688
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareGLRF
Refinement softwareCNS (0.5)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.590
High resolution limit [Å]3.5003.500
Rmerge0.0950.121
Number of reflections812178
<I/σ(I)>4.4
Completeness [%]63.740.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, sitting drop

*

7.5

*

19

*

0.75-1.5% PEG8000, 8 mM CaCl2, 20 mM Bis-Tris pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropvirus10 (mg/ml)
21dropBis-Tris20 (mM)
31dropTris-HCl20 (mM)
41reservoirPEG80000.75-1.50 (%)
51reservoir8 (mM)or 5mM EDTA

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PDB entries from 2025-06-11

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