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1C6Z

ALTERNATE BINDING SITE FOR THE P1-P3 GROUP OF A CLASS OF POTENT HIV-1 PROTEASE INHIBITORS AS A RESULT OF CONCERTED STRUCTURAL CHANGE IN 80'S LOOP.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Spacegroup nameP 21 21 21
Unit cell lengths88.130, 88.140, 32.990
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution8.000 - 2.500
R-factor0.18
Rwork0.180
R-free0.29000
RMSD bond length0.017
RMSD bond angle2.500
Refinement softwareX-PLOR
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.000

*

2.590
High resolution limit [Å]2.500

*

2.500
Rmerge0.0620.224

*

Total number of observations41654

*

Number of reflections7717677

*

Completeness [%]82.073
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

5

*

inhibitor-protein mixture and the reservoir solution were mixed in a 1:1(v/v) ratio

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropenzyme4-6 (mg/ml)
21dropMES10 (mM)
31dropdithiothreitol1 (mM)
41dropEDTA1 (mM)
51drop3 (mM)
61dropinhibitormixed with the protein containing buffer in a molar ratio of 1:3 to 1:5, with a final DMSO concentration of 2-5%
71reservoir0.6-0.8 (M)
81reservoir0.1 (M)

224004

PDB entries from 2024-08-21

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