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1C6X

ALTERNATE BINDING SITE FOR THE P1-P3 GROUP OF A CLASS OF POTENT HIV-1 PROTEASE INHIBITORS AS A RESULT OF CONCERTED STRUCTURAL CHANGE IN 80'S LOOP.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Spacegroup nameP 21 21 21
Unit cell lengths88.210, 88.210, 32.920
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution8.000 - 2.500
R-factor0.2
Rwork0.200
R-free0.30000
RMSD bond length0.015
RMSD bond angle2.400
Refinement softwareX-PLOR
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.000

*

2.590
High resolution limit [Å]2.500

*

2.500
Rmerge0.0510.167

*

Total number of observations79495

*

Number of reflections8318775

*

Completeness [%]88.084
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

5

*

inhibitor-protein mixture and the reservoir solution were mixed in a 1:1(v/v) ratio

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropenzyme4-6 (mg/ml)
21dropMES10 (mM)
31dropdithiothreitol1 (mM)
41dropEDTA1 (mM)
51drop3 (mM)
61dropinhibitormixed with the protein containing buffer in a molar ratio of 1:3 to 1:5, with a final DMSO concentration of 2-5%
71reservoir0.6-0.8 (M)
81reservoir0.1 (M)

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PDB entries from 2025-06-18

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