1BZE
TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 296 |
Detector technology | IMAGE PLATE |
Collection date | 1996-07-15 |
Detector | RIGAKU RAXIS IIC |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 43.470, 86.230, 65.340 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 6.000 - 1.800 |
R-factor | 0.203 |
Rwork | 0.203 |
R-free | 0.27300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1tsh |
RMSD bond length | 0.010 |
RMSD bond angle | 25.500 * |
Data reduction software | bioteX |
Data scaling software | bioteX |
Phasing software | X-PLOR |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.100 | 2.000 |
High resolution limit [Å] | 1.800 * | 1.700 |
Rmerge | 0.086 * | 0.210 |
Total number of observations | 138506 * | |
Number of reflections | 20548 * | |
<I/σ(I)> | 7.2 | 1.6 |
Completeness [%] | 82.7 * | 49 |
Redundancy | 3.0 * | 1.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 7.5 * | 23 * | PURIFIED PROTEIN (10MG/ML IN TRIS BUFFER, PH 7.5) WAS CRYSTALLIZED FROM 2M AMMONIUM SULFATE, 100MM CITRATE BUFFER, PH 5.5 AT ROOM TEMPERATURE. |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | Tris | 0.1 (M) | |
2 | 1 | drop | protein | 10-20 (mg/ml) | |
3 | 1 | reservoir | ammonium sulfate | 1.5-3 (M) | |
4 | 1 | reservoir | citrate | 100 (mM) |