1B8K
Neurotrophin-3 from Human
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-6A |
Synchrotron site | Photon Factory |
Beamline | BL-6A |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Detector | FUJI |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 38.300, 52.300, 67.700 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.150 |
R-factor | 0.238 |
Rwork | 0.238 |
R-free | 0.30200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bnf |
RMSD bond length | 0.015 |
RMSD bond angle | 2.150 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | X-PLOR |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 20.000 |
High resolution limit [Å] | 2.150 |
Rmerge | 0.047 |
Number of reflections | 7414 |
Completeness [%] | 82.0 |
Redundancy | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 8 * | 15 * | CRYSTALLIZATION CONDITIONS: 7% ISOPROPANOL 185 MM NACITRATE PH 5.6 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
2 | 1 | drop | Tris-HCl | 10 (mM) | |
3 | 1 | reservoir | PEG8000 | 22 (%) | |
4 | 1 | reservoir | PIPES | 100 (mM) | |
5 | 1 | drop | 24 amino acid peptide | 1:2 ratio (NT4 protomer:peptide) |