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1B24

I-DMOI, INTRON-ENCODED ENDONUCLEASE

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X12C
Synchrotron siteNSLS
BeamlineX12C
Temperature [K]100
Detector technologyCCD
Collection date1997-09
DetectorBRANDEIS
Wavelength(s)0.9300,0.9785,0.9789
Spacegroup nameC 1 2 1
Unit cell lengths93.730, 37.220, 56.280
Unit cell angles90.00, 112.80, 90.00
Refinement procedure
Resolution10.000 - 2.200
R-factor0.218

*

Rwork0.218
R-free0.32400
Structure solution methodMAD
RMSD bond length0.007
RMSD bond angle26.230

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASES
Refinement softwareX-PLOR (3.851)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.280
High resolution limit [Å]2.2002.200
Rmerge0.059

*

0.070

*

Number of reflections8884
<I/σ(I)>32.324.7
Completeness [%]98.597.4
Redundancy11.16
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8

*

310

*

HANGING DROP VAPOR-DIFFUSION METHOD: 4UL I-DMOI PROTEIN 1UL 20MM N-OCTYL-B- GLUCOPYRANOSIDE 4UL PRECIPITATING BUFFER: 30% PEG 3350 200MM SODIUM ACETATE 100MM TRIS-HCL PH 8.5, VAPOR DIFFUSION, HANGING DROP
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
1114UL I-DMOI PROTEIN
2121UL 20MM N-OCTYL-B-GLUCOPYRANOSIDE
3124UL PRECIPITATING BUFFER
41230% PEG 3350
512200MM SODIUM ACETATE
612100MM TRIS-HCL PH 8.5
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
101reservoirTris-HCl100 (mM)
21dropTris-HCl5 (mM)
31drop150 (mM)
41dropethylene glycol10 (%)
51dropdithiothreitol1 (mM)
61reservoirPEG33502-3 (%)
71reservoirsodium acetate1-1.2 (M)
81reservoirethylene glycol10 (%)
91reservoirsodium/potassium phosphate50 (mM)

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PDB entries from 2024-11-20

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