1B24
I-DMOI, INTRON-ENCODED ENDONUCLEASE
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X12C |
Synchrotron site | NSLS |
Beamline | X12C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1997-09 |
Detector | BRANDEIS |
Wavelength(s) | 0.9300,0.9785,0.9789 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 93.730, 37.220, 56.280 |
Unit cell angles | 90.00, 112.80, 90.00 |
Refinement procedure
Resolution | 10.000 - 2.200 |
R-factor | 0.218 * |
Rwork | 0.218 |
R-free | 0.32400 |
Structure solution method | MAD |
RMSD bond length | 0.007 |
RMSD bond angle | 26.230 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASES |
Refinement software | X-PLOR (3.851) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.059 * | 0.070 * |
Number of reflections | 8884 | |
<I/σ(I)> | 32.3 | 24.7 |
Completeness [%] | 98.5 | 97.4 |
Redundancy | 11.1 | 6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 * | 310 * | HANGING DROP VAPOR-DIFFUSION METHOD: 4UL I-DMOI PROTEIN 1UL 20MM N-OCTYL-B- GLUCOPYRANOSIDE 4UL PRECIPITATING BUFFER: 30% PEG 3350 200MM SODIUM ACETATE 100MM TRIS-HCL PH 8.5, VAPOR DIFFUSION, HANGING DROP |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | 4UL I-DMOI PROTEIN | ||
2 | 1 | 2 | 1UL 20MM N-OCTYL-B-GLUCOPYRANOSIDE | ||
3 | 1 | 2 | 4UL PRECIPITATING BUFFER | ||
4 | 1 | 2 | 30% PEG 3350 | ||
5 | 1 | 2 | 200MM SODIUM ACETATE | ||
6 | 1 | 2 | 100MM TRIS-HCL PH 8.5 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
10 | 1 | reservoir | Tris-HCl | 100 (mM) | |
2 | 1 | drop | Tris-HCl | 5 (mM) | |
3 | 1 | drop | 150 (mM) | ||
4 | 1 | drop | ethylene glycol | 10 (%) | |
5 | 1 | drop | dithiothreitol | 1 (mM) | |
6 | 1 | reservoir | PEG3350 | 2-3 (%) | |
7 | 1 | reservoir | sodium acetate | 1-1.2 (M) | |
8 | 1 | reservoir | ethylene glycol | 10 (%) | |
9 | 1 | reservoir | sodium/potassium phosphate | 50 (mM) |