1A04
THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM
Experimental procedure
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 93 |
Detector technology | IMAGE PLATE |
Collection date | 1995-07-27 |
Detector | RIGAKU |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 156.306, 38.527, 106.892 |
Unit cell angles | 90.00, 131.91, 90.00 |
Refinement procedure
Resolution | 8.000 - 2.200 |
R-factor | 0.211 |
Rwork | 0.211 |
R-free | 0.26700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1rnl |
RMSD bond length | 0.009 |
RMSD bond angle | 1.360 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR (3.1) |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 65.000 | 2.440 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.078 | |
Number of reflections | 22871 | |
<I/σ(I)> | 9.8 | |
Completeness [%] | 99.9 | 99.3 |
Redundancy | 5.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 4 * | THE PROTEIN SOLUTION CONTAINING 23.3 MG/ML OF PURIFIED NARL, 20 MM TRIS.HCL (PH=7.6), 0.5 MM MGCL2, AND 10% GLYCEROL WAS MIXED WITH AN EQUAL VOLUME OF THE RESERVOIR SOLUTION CONTAINING 0.1 M TRIS.HCL (PH=8.5), 0.2 M SODIUM ACETATE, AND 30% POLYETHYLENE GLYCOL (PEG) 4000. SITTING DROPS CONTAINING 20 ML OF MIXTURE WERE EQUILIBRATED BY VAPOR DIFFUSION AT 4 DEGREES AGAINST 20 ML OF THE RESERVOIR SOLUTION. CRYSTALS BEGAN TO APPEAR AS CLUSTERS OF PLATES AFTER 11-15 DAYS., vapor diffusion - sitting drop, temperature 277K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | NarL | 11.65 (mg/ml) | |
10 | 1 | reservoir | PEG4000 | 30 (%) | |
2 | 1 | drop | Tris-HCl | 10 (mM) | |
3 | 1 | drop | 0.25 (mM) | ||
4 | 1 | drop | glycerol | 5 (%) | |
5 | 1 | drop | Tris-HCl | 0.05 (M) | |
6 | 1 | drop | sodium acetate | 0.1 (M) | |
7 | 1 | drop | PEG4000 | 15 (%) | |
8 | 1 | reservoir | Tris-HCl | 0.1 (M) | |
9 | 1 | reservoir | sodium acetate | 0.2 (M) |