Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1ZQ1

Structure of GatDE tRNA-Dependent Amidotransferase from Pyrococcus abyssi

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-4
Synchrotron siteESRF
BeamlineID14-4
Temperature [K]100
Detector technologyCCD
Collection date2005-01-29
DetectorADSC QUANTUM 4
Wavelength(s)0.97576,0.97956
Spacegroup nameP 1 21 1
Unit cell lengths102.700, 138.200, 134.400
Unit cell angles90.00, 109.60, 90.00
Refinement procedure
Resolution50.000 - 3.000
R-factor0.2171
Rwork0.217
R-free0.25600
Structure solution methodMAD
RMSD bond length0.007
RMSD bond angle1.454
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareSHARP
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.100
High resolution limit [Å]3.0003.000
Rmerge0.0690.374
Number of reflections137974
Completeness [%]98.799.6
Redundancy1.91.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9297PEG 20000, Dioxane, Bicine, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon