Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1XM5

Crystal structure of metal-dependent hydrolase ybeY from E. coli, Pfam UPF0054

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]110
Detector technologyCCD
Collection date2004-06-28
DetectorMARRESEARCH
Wavelength(s)0.97919
Spacegroup nameP 21 21 21
Unit cell lengths46.073, 119.613, 132.903
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.000 - 2.700
R-factor0.239
Rwork0.234
R-free0.27300
Structure solution methodMAD
RMSD bond length0.007
RMSD bond angle1.200
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareSOLVE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0002.800
High resolution limit [Å]2.7002.700
Number of reflections20911
Completeness [%]97.999.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5278PEG3350, magnesium chloride, Bis Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 278K
1VAPOR DIFFUSION, HANGING DROP6.5278PEG3350, magnesium chloride, Bis Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 278K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon