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1V1B

2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS WITH BOUND ATP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL26B1
Synchrotron siteSPring-8
BeamlineBL26B1
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2003-03-15
DetectorRIGAKU IMAGE PLATE R-AXISV
Spacegroup nameP 63
Unit cell lengths84.721, 84.721, 321.613
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution29.460 - 2.600
R-factor0.1779
Rwork0.178
R-free0.26580
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1v19
RMSD bond length0.006
RMSD bond angle1.200
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareCNS
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.690
High resolution limit [Å]2.6002.600
Rmerge0.0810.284
Number of reflections36923
<I/σ(I)>9.931.78
Completeness [%]91.787.8
Redundancy2.41
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5298VAPOUR-DIFFUSION SITTING DROP, AT 298 K. 10.0 MG/ML OF PROTEIN SOLUTION CONTAINING 5 MM ATP WAS MIXED WITH RESERVOIR SOLUTION CONTAINING 0.35 M AMMONIUM SULFATE AND 0.1 M TRIS-HCL BUFFER, PH 8.5. BEFORE THE DATA COLLECTION THE CRYSTAL WAS SOAKED IN SOLUTION CONTAINING 0.35 M MAGNESIUM CHLORIDE INSTEAD OF AMMONIUM SULFATE. THE CRYOPROTECTANT CONTAINED 33% OF ETHYLENE GLYCOL IN ADDITION TO MAGNESIUM CHLORIDE, BUFFER AND ATP

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PDB entries from 2024-05-15

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