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1UDQ

Crystal structure of the tRNA processing enzyme RNase PH T125A mutant from Aquifex aeolicus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]100
Detector technologyCCD
Collection date2003-03-06
DetectorMARRESEARCH
Wavelength(s)1.0
Spacegroup nameP 63 2 2
Unit cell lengths144.807, 144.807, 83.337
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution50.000

*

- 2.300
R-factor0.228
Rwork0.228
R-free0.26300

*

Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010

*

RMSD bond angle1.600
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.380
High resolution limit [Å]2.3002.300
Rmerge0.0730.481
Number of reflections23307
<I/σ(I)>232
Completeness [%]99.498.8
Redundancy13.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8

*

20

*

ammonium sulfate, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropTris-HCl20 (mM)pH8.0
21drop5 (mM)
31drop50 (mM)
41drop10 (mM)
51dropprotein1.5 (mg/ml)
61reservoirammonium sulfate2 (M)

246031

PDB entries from 2025-12-10

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