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1S2A

Crystal structures of prostaglandin D2 11-ketoreductase in complex with the non-steroidal anti-inflammatory drugs flufenamic acid and indomethacin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-2
Synchrotron siteESRF
BeamlineID14-2
Temperature [K]100
Detector technologyCCD
Collection date2002-02-09
DetectorADSC QUANTUM 4
Wavelength(s)0.93
Spacegroup nameP 21 21 21
Unit cell lengths55.808, 63.074, 96.200
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 1.700
R-factor0.17356
Rwork0.172
R-free0.19800

*

Structure solution methodisomorphous replacement
Starting model (for MR)1s1p
RMSD bond length0.009
RMSD bond angle1.600

*

Data reduction softwareMOSFLM
Data scaling softwareCCP4 ((SCALA))
Phasing softwareCNS
Refinement softwareREFMAC (5.1.19)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.000

*

1.790
High resolution limit [Å]1.7001.700
Rmerge0.049

*

0.200

*

Total number of observations127566

*

Number of reflections372964785

*

<I/σ(I)>18.74.7
Completeness [%]98.088.3
Redundancy3.42.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7

*

291PEG, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein6 (mg/ml)
21droppotassium phosphate10 (mM)pH7.0
31dropdithiothreitol1 (mM)
41dropEDTA1 (mM)
51dropNADP+2 (mM)
61reservoirPEG400025 (%(w/v))
71reservoirsodium citrate100 (mM)pH6.0
81reservoirMPD2.5 (%(v/v))
91reservoirammonium acetate800 (mM)

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PDB entries from 2024-05-15

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