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1RP5

PBP2x from Streptococcus pneumoniae strain 5259 with reduced susceptibility to beta-lactam antibiotics

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM30A
Synchrotron siteESRF
BeamlineBM30A
Temperature [K]100
Detector technologyCCD
Collection date2002-11-17
DetectorMARRESEARCH
Wavelength(s)0.97936
Spacegroup nameP 42 2 2
Unit cell lengths194.989, 194.989, 154.245
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.000 - 3.000
Rwork0.231
R-free0.25600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1qme
RMSD bond length0.007
RMSD bond angle23.200

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Data reduction softwareMOSFLM
Data scaling softwareCCP4 ((SCALA))
Phasing softwareMOLREP
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.0003.160
High resolution limit [Å]3.0003.000
Rmerge0.092

*

0.426

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Total number of observations657234

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Number of reflections57788
<I/σ(I)>29.73
Completeness [%]96.577.2
Redundancy11.45.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, sitting drop

*

8

*

8

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PEG 1500, SODIUM ACETATE, AMMONIUM SULFATE, pH 4.3, VAPOR DIFFUSION, HANGING DROP, temperature 281K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG150014 (%)
21reservoirsodium acetate50 (mM)pH4.3
31reservoirammonium sulfate200 (mM)
41dropTris-HCl50 (mM)pH8.
51drop100 (mM)
61dropEDTA1 (mM)
71dropprotein10 (mg/ml)

246031

PDB entries from 2025-12-10

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