1RP5
PBP2x from Streptococcus pneumoniae strain 5259 with reduced susceptibility to beta-lactam antibiotics
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE BM30A |
| Synchrotron site | ESRF |
| Beamline | BM30A |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2002-11-17 |
| Detector | MARRESEARCH |
| Wavelength(s) | 0.97936 |
| Spacegroup name | P 42 2 2 |
| Unit cell lengths | 194.989, 194.989, 154.245 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 42.000 - 3.000 |
| Rwork | 0.231 |
| R-free | 0.25600 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1qme |
| RMSD bond length | 0.007 |
| RMSD bond angle | 23.200 * |
| Data reduction software | MOSFLM |
| Data scaling software | CCP4 ((SCALA)) |
| Phasing software | MOLREP |
| Refinement software | CNS (1.1) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 42.000 | 3.160 |
| High resolution limit [Å] | 3.000 | 3.000 |
| Rmerge | 0.092 * | 0.426 * |
| Total number of observations | 657234 * | |
| Number of reflections | 57788 | |
| <I/σ(I)> | 29.7 | 3 |
| Completeness [%] | 96.5 | 77.2 |
| Redundancy | 11.4 | 5.1 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | Vapor diffusion, sitting drop * | 8 * | 8 * | PEG 1500, SODIUM ACETATE, AMMONIUM SULFATE, pH 4.3, VAPOR DIFFUSION, HANGING DROP, temperature 281K |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | reservoir | PEG1500 | 14 (%) | |
| 2 | 1 | reservoir | sodium acetate | 50 (mM) | pH4.3 |
| 3 | 1 | reservoir | ammonium sulfate | 200 (mM) | |
| 4 | 1 | drop | Tris-HCl | 50 (mM) | pH8. |
| 5 | 1 | drop | 100 (mM) | ||
| 6 | 1 | drop | EDTA | 1 (mM) | |
| 7 | 1 | drop | protein | 10 (mg/ml) |






