1R30
The Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.30000, 1.73827, 1.74150 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 155.690, 155.690, 90.880 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.450 - 3.400 |
R-factor | 0.256 |
Rwork | 0.256 |
R-free | 0.30000 |
Structure solution method | MAD |
RMSD bond length | 0.009 |
RMSD bond angle | 22.800 * |
Data scaling software | XDS |
Phasing software | SOLVE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 100.000 * | 3.510 |
High resolution limit [Å] | 3.400 | 3.400 |
Rmerge | 0.066 * | 0.259 * |
Number of reflections | 17465 | |
<I/σ(I)> | 15.79 | 3.78 |
Completeness [%] | 98.1 * | 87.9 * |
Redundancy | 5.4 * | 1.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 * | 298 | Tris, MgCl2, PEG 1000, Glycine, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 20 (mg/ml) | |
2 | 1 | drop | Tris-HCl | 25 (mM) | pH8.0 |
3 | 1 | reservoir | Tris-HCl | 0.1 (M) | |
4 | 1 | reservoir | glycine | 0.1 (M) | |
5 | 1 | reservoir | 0.2 (M) | ||
6 | 1 | reservoir | PEG1000 | 20 (%(w/v)) | pH6.5 |
7 | 1 | reservoir | 2.5 (M) |