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1QCU

CRYSTAL STRUCTURE OF AN 18 BASE PAIR COPY CONTROL RELATED RNA DUPLEX

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE A1
Synchrotron siteCHESS
BeamlineA1
Temperature [K]100
Detector technologyCCD
Collection date1997-05-17
DetectorPRINCETON 2K
Spacegroup nameP 3
Unit cell lengths43.806, 43.806, 29.170
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution30.000 - 1.200
R-factor0.116

*

R-free0.15000

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)A-RNA
RMSD bond length0.012

*

RMSD bond angle1.930

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR
Refinement softwareSHELXL-97
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0001.240
High resolution limit [Å]1.2001.200
Rmerge0.0730.274
Number of reflections18266
<I/σ(I)>31.85.2
Completeness [%]93.0

*

77

*

Redundancy4.22.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

6.520

*

(NH4)2SO4, SODIUM CACODYLATE, MGCL2, ROP PROTEIN, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
1Vapor diffusion

*

6.520

*

(NH4)2SO4, SODIUM CACODYLATE, MGCL2, ROP PROTEIN, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111(NH4)2SO4
211SODIUM CACODYLATE
311MGCL2
411ROP PROTEIN
512(NH4)2SO4
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropRNA oligo1.0 (mM)
21droprop protein1.0 (mM)
31dropammonium sulfate1.05 (M)
41dropsodium cacodylate5 (mM)
51drop1 (mM)
61dropsodium azide0.02 (%)
71reservoirammonium sulfate2.1 (M)

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PDB entries from 2024-05-15

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