Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1PN3

Crystal Structure of TDP-epi-Vancosaminyltransferase GtfA in complexes with TDP and the acceptor substrate DVV.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X25
Synchrotron siteNSLS
BeamlineX25
Temperature [K]100
Detector technologyCCD
Collection date2003-02-03
DetectorADSC QUANTUM 315
Spacegroup nameP 32 2 1
Unit cell lengths152.500, 152.500, 98.740
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution30.000 - 2.800
R-factor0.212
Rwork0.212
R-free0.25000

*

Structure solution methodMAD
RMSD bond length0.008
RMSD bond angle22.970

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSOLVE (V. 2.0)
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.900
High resolution limit [Å]2.8002.800
Rmerge0.081

*

0.295

*

Number of reflections31308
<I/σ(I)>15.1
Completeness [%]99.2

*

99.8
Redundancy76
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

6.1NA,K PHOSPHATE, PH 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirsodium potassium phosphate1.3 (M)pH6.1

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon