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1P9S

Coronavirus Main Proteinase (3CLpro) Structure: Basis for Design of anti-SARS Drugs

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsELETTRA BEAMLINE 5.2R
Synchrotron siteELETTRA
Beamline5.2R
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2000-01-01
DetectorMARRESEARCH
Wavelength(s)0.9801
Spacegroup nameP 1 21 1
Unit cell lengths53.356, 76.240, 73.477
Unit cell angles90.00, 103.70, 90.00
Refinement procedure
Resolution70.700

*

- 2.540
R-factor0.20068
Rwork0.196
R-free0.28000

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1lvo
RMSD bond length0.020
RMSD bond angle1.800

*

Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]70.700

*

High resolution limit [Å]2.5402.540

*

Rmerge0.1420.412

*

Total number of observations216984

*

Number of reflections17709
<I/σ(I)>9.1
Completeness [%]98.2

*

Redundancy12.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8

*

10

*

PEG 10000, 1,6-hexanediol, DTT, HEPES, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein7.1 (mg/ml)
101reservoirdithiothreitol5 (mM)
111reservoirdioxane12 (%)
121reservoirHEPES100 (mM)pH8.5
21dropTris-HCl11 (mM)pH8.0
31drop200 (mM)
41dropEDTA0.1 (mM)
51dropdithiothreitol1 (mM)
61drop1,6-hexanediol1 (%)
71dropPEG1000010 (%)
81reservoirPEG1000020 (%)
91reservoir1,6-hexanediol2 (%)

220113

PDB entries from 2024-05-22

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