1P7G
Crystal structure of superoxide dismutase from Pyrobaculum aerophilum
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X8C |
Synchrotron site | NSLS |
Beamline | X8C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1999-06-11 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.9785, 0.9708, 0.9787, 0.9863 |
Spacegroup name | P 32 |
Unit cell lengths | 163.429, 163.429, 172.169 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.450 - 1.800 |
R-factor | 0.162 |
Rwork | 0.162 |
R-free | 0.21700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1SSS |
RMSD bond length | 0.007 |
RMSD bond angle | 21.100 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | GLRF |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.400 * | 1.860 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.076 | 0.302 |
Total number of observations | 2013670 * | |
Number of reflections | 465126 | |
<I/σ(I)> | 20.1 | 3.3 |
Completeness [%] | 97.6 | 82.6 |
Redundancy | 4.3 | 1.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 295 * | PEG 3000, calcium acetate, hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | PEG3000 | 10-15 (%(v/v)) | |
2 | 1 | reservoir | HEPES | 0.1 (M) | pH7.5 |
3 | 1 | reservoir | calcium acetate | 0.15 (M) | |
4 | 1 | drop | protein | 22 (mg/ml) |