1ONI
Crystal structure of a human p14.5, a translational inhibitor reveals different mode of ligand binding near the invariant residues of the Yjgf/UK114 protein family
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2002-12-06 |
Detector | MARRESEARCH |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 154.158, 154.158, 104.559 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 1.900 |
Rwork | 0.185 |
R-free | 0.21600 |
Structure solution method | SAD |
RMSD bond length | 0.013 |
RMSD bond angle | 1.542 |
Data scaling software | SCALEPACK |
Phasing software | SnB |
Refinement software | REFMAC (5.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.920 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.081 | 0.550 |
Total number of observations | 754078 * | |
Number of reflections | 110385 | |
<I/σ(I)> | 22.9 | 2.3 |
Completeness [%] | 98.4 | 94.4 |
Redundancy | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | Sodium malonate, sodium benzoate, pH 7.00, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 12.8 (mg/ml) | |
2 | 1 | reservoir | sodium malonate | 2 (M) | |
3 | 1 | reservoir | sodium benzoate | 0.3 (M) | pH7.0 |