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1OCS

Crystal structure of the yeast PX-doamin protein Grd19p (sorting nexin3) complexed to phosphatidylinosytol-3-phosphate.

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM30A
Synchrotron siteESRF
BeamlineBM30A
Temperature [K]100
Collection date2002-02-15
Wavelength(s)0.9797,0.9803,0.98,0.9825
Spacegroup nameP 61 2 2
Unit cell lengths55.730, 55.730, 187.510
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution20.000 - 2.030
R-factor0.2173
Rwork0.217
R-free0.24700

*

Structure solution methodMAD
RMSD bond length0.006
RMSD bond angle22.700

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0002.080
High resolution limit [Å]2.0302.030
Rmerge0.0650.296
Total number of observations60571

*

Number of reflections17289

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<I/σ(I)>13.62.5
Completeness [%]99.798.1
Redundancy5.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

6.8293

*

16% PEG 4000, 0.1M NA-HEPES PH7,5, pH 6.80
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein3 (mg/ml)
21reservoirPEG400016 (%)
31reservoirsodium HEPES0.1 (M)pH7.5

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PDB entries from 2024-05-15

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