1NZV
Crystal Structure of Src SH2 domain bound to doubly phosphorylated peptide PQpYIpYVPA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 200 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 100.256, 67.727, 29.636 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 * - 2.100 |
Rwork | 0.224 |
R-free | 0.27300 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1sps |
RMSD bond length | 0.008 |
RMSD bond angle | 24.200 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | |
High resolution limit [Å] | 2.000 * | 2.040 * |
Rmerge | 0.104 * | 0.340 * |
Total number of observations | 162554 * | |
Number of reflections | 14205 * | |
Completeness [%] | 90.4 | 80.4 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 296 | PEG 4000, magnesium chloride,Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 296K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 60 (mg/ml) | |
2 | 1 | reservoir | PEG4000 | 34 (%) | |
3 | 1 | reservoir | HEPES | 0.1 (M) | pH8.0 |
4 | 1 | reservoir | 0.2 (M) |