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1NYI

Crosslinked Hammerhead Ribozyme Initial State

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
Collection date2001-12-01
DetectorADSC QUANTUM 4
Wavelength(s)1.15
Spacegroup nameP 31 2 1
Unit cell lengths65.639, 65.639, 137.475
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution19.750

*

- 2.850
R-factor0.21

*

Rwork0.203
R-free0.23000

*

Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)urx 057
RMSD bond length0.010
RMSD bond angle2.007
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareCNS
Refinement softwareREFMAC (5.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]100.000

*

2.923
High resolution limit [Å]2.8502.850
Rmerge0.0720.349
Total number of observations8413

*

Number of reflections7544
<I/σ(I)>13.82.2
Completeness [%]99.3

*

99.3
Redundancy5.25.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5

*

16

*

1.8 M Lithium sulphate and 50 mM sodium cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 20.0K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111LiSO4
211sodium cacodylate
312LiSO4
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropribozyme1 (mM)
21dropsodium acetate50 (mM)pH5.0
31drop1.8 (M)
41reservoirsodium acetate50 (mM)pH5.0
51reservoir1.8 (M)
61reservoirEDTA1.0 (mM)

219869

PDB entries from 2024-05-15

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