Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1MKY

Structural Analysis of the Domain Interactions in Der, a Switch Protein Containing Two GTPase Domains

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X4A
Synchrotron siteNSLS
BeamlineX4A
Temperature [K]100
Detector technologyCCD
Collection date2001-11-04
DetectorADSC QUANTUM 4
Wavelength(s)0.9786
Spacegroup nameP 21 21 21
Unit cell lengths62.137, 77.994, 96.597
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000

*

- 1.900
R-factor0.204
Rwork0.204
R-free0.22700

*

Structure solution methodSAD
RMSD bond length0.007
RMSD bond angle22.400

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.000

*

1.990
High resolution limit [Å]1.9001.900
Rmerge0.074

*

0.344

*

Total number of observations465562

*

Number of reflections44093

*

<I/σ(I)>26.56.7
Completeness [%]99.699.2

*

Redundancy10.610
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP10298sodium phosphate, potassium phosphate, 3-(cyclohexylamino)-1-propane sulphonic acid (CAPS), pH 10.0, VAPOR DIFFUSION, HANGING DROP at 298K, temperature 298K, temperature 298.0K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoir1.3 (M)
21reservoir0.7 (M)
31reservoirCAPS50 (mM)pH10.0
41reservoirbeta-mercaptoethanol15 (mM)
51dropprotein26 (mg/ml)
61drop0.8 (M)
71drop0.5 (M)
81dropCAPS50 (mM)pH10.0
91dropbeta-mercaptoethanol15 (mM)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon