1MD6
High resolution crystal structure of murine IL-1F5 reveals unique loop conformation for specificity
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-2 |
Synchrotron site | ESRF |
Beamline | ID14-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-02-28 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.934 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 78.932, 78.932, 69.740 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.500 - 1.600 |
Rwork | 0.204 |
R-free | 0.21200 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2mib |
RMSD bond length | 0.005 |
RMSD bond angle | 1.400 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.500 | 1.580 |
High resolution limit [Å] | 1.580 * | 1.500 |
Rmerge | 0.078 * | 0.478 |
Number of reflections | 40560 * | |
<I/σ(I)> | 18.9 | 3.7 |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.5 | 7.0 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 18 * | ammomium sulphate, HEPES, potassium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 5 (mg/ml) | |
2 | 1 | reservoir | 0.1 (M) | ||
3 | 1 | reservoir | HEPES | 0.1 (M) | pH7.5 |
4 | 1 | reservoir | ammonium sulfate | 1.3 (M) |