Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1M9H

Corynebacterium 2,5-DKGR A and Phe 22 replaced with Tyr (F22Y), Lys 232 replaced with Gly (K232G), Arg 238 replaced with His (R238H)and Ala 272 replaced with Gly (A272G)in presence of NADH cofactor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]103
Detector technologyIMAGE PLATE
Collection date2002-04-04
DetectorRIGAKU RAXIS IIC
Wavelength(s)1.5418
Spacegroup nameC 1 2 1
Unit cell lengths111.950, 55.240, 51.540
Unit cell angles90.00, 111.66, 90.00
Refinement procedure
Resolution27.000

*

- 2.000
R-factor0.214
Rwork0.213
R-free0.26100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1a80
RMSD bond length0.008
RMSD bond angle14.900

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareTNT
Refinement softwareTNT
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]27.000

*

2.050
High resolution limit [Å]2.0002.000
Rmerge0.1140.276
Total number of observations242073

*

Number of reflections18364

*

<I/σ(I)>16.64.2
Completeness [%]92.9

*

83.3
Redundancy4.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5298lithium sulfate monohydrate, hepes-sodium, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
1VAPOR DIFFUSION, HANGING DROP7.5298lithium sulfate monohydrate, hepes-sodium, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
1VAPOR DIFFUSION, HANGING DROP7.5298lithium sulfate monohydrate, hepes-sodium, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21dropTris-HCl25 (mM)pH7.5
31reservoirlithium sulfate1.5 (M)
41reservoirsodium HEPES0.1 (M)pH7.5

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon