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1LDJ

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F1
Synchrotron siteCHESS
BeamlineF1
Temperature [K]170
Detector technologyCCD
DetectorADSC QUANTUM 4
Wavelength(s)0.943
Spacegroup nameP 1 21 1
Unit cell lengths113.974, 49.968, 135.883
Unit cell angles90.00, 107.83, 90.00
Refinement procedure
Resolution15.000 - 3.000
R-factor0.247

*

Rwork0.247
R-free0.28800
Structure solution methodMIR
RMSD bond length0.008

*

RMSD bond angle1.700

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMLPHARE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]15.000
High resolution limit [Å]3.000
Rmerge0.065

*

0.404

*

Total number of observations92525

*

Number of reflections28766
Completeness [%]97.6

*

97

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP84

*

10% Ethanol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
1VAPOR DIFFUSION, HANGING DROP84

*

10% Ethanol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirTris-HCl100 (mM)
21reservoirethanol12-18 (%)
31reservoir200-500 (mM)
41reservoirdithiothreitol5 (mM)pH8.0
51dropprotein10-20 (mg/ml)

219869

PDB entries from 2024-05-15

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