1LDJ
Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 170 |
Detector technology | CCD |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.943 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 113.974, 49.968, 135.883 |
Unit cell angles | 90.00, 107.83, 90.00 |
Refinement procedure
Resolution | 15.000 - 3.000 |
R-factor | 0.247 * |
Rwork | 0.247 |
R-free | 0.28800 |
Structure solution method | MIR |
RMSD bond length | 0.008 * |
RMSD bond angle | 1.700 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MLPHARE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 15.000 | |
High resolution limit [Å] | 3.000 | |
Rmerge | 0.065 * | 0.404 * |
Total number of observations | 92525 * | |
Number of reflections | 28766 | |
Completeness [%] | 97.6 * | 97 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 4 * | 10% Ethanol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 4 * | 10% Ethanol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | Tris-HCl | 100 (mM) | |
2 | 1 | reservoir | ethanol | 12-18 (%) | |
3 | 1 | reservoir | 200-500 (mM) | ||
4 | 1 | reservoir | dithiothreitol | 5 (mM) | pH8.0 |
5 | 1 | drop | protein | 10-20 (mg/ml) |