Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1L9B

X-Ray Structure of the Cytochrome-c(2)-Photosynthetic Reaction Center Electron Transfer Complex from Rhodobacter sphaeroides in Type II Co-Crystals

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
Collection date2001-03-18
DetectorADSC QUANTUM 4
Wavelength(s)1.10
Spacegroup nameP 1 21 1
Unit cell lengths78.222, 115.650, 79.677
Unit cell angles90.00, 110.29, 90.00
Refinement procedure
Resolution50.000

*

- 2.400
R-factor0.22

*

Rwork0.220
R-free0.26400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB ID Code 1AIJ and 1CXC are starting models for the reaction center and cytochrome c2 respectively.
RMSD bond length0.008
RMSD bond angle0.300

*

Data reduction softwareMOSFLM
Data scaling softwareCCP4 ((SCALA))
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.7302.530
High resolution limit [Å]2.4002.400
Rmerge0.100

*

0.326

*

Total number of observations196158

*

Number of reflections50331
<I/σ(I)>4.62.1
Completeness [%]96.883.7
Redundancy3.93
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.519

*

10% PEG 4000, 0.06%(w/v) lauryldimethylamine-N-oxide, 3.9%(w/v) heptane-1,2,3-triol, 15 mM Tricine, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein7.7 (mg/ml)
21dropcytochrome c22 (mg/ml)
31dropPEG400010 (%(w/v))
41dropLDAO0.06 (%(w/v))
51dropheptanetriol3.9 (%(w/v))
61dropTricine15 (mM)pH8.5
71reservoirPEG400022 (%(w/v))
81reservoirTricine50 (mM)pH8.5

246333

PDB entries from 2025-12-17

PDB statisticsPDBj update infoContact PDBjnumon