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1L1F

Structure of human glutamate dehydrogenase-apo form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU300
Temperature [K]200
Detector technologyIMAGE PLATE
Collection date2001-02-14
DetectorRIGAKU RAXIS IV
Wavelength(s)1.5418
Spacegroup nameP 1
Unit cell lengths97.800, 98.800, 124.200
Unit cell angles86.26, 70.28, 60.34
Refinement procedure
Resolution8.000 - 2.700
R-factor0.262

*

Rwork0.262
R-free0.30200
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.000
High resolution limit [Å]2.7002.700

*

Rmerge0.047

*

0.216

*

Number of reflections94574

*

7168

*

Completeness [%]90.554.8

*

Redundancy2.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7298PEG 8000, NaCl, sodium phosphate, sodium azide, octyl-b-glucopyranoside, methyl pentanediol, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoiroctyl-beta-glucopyranoside1 (%(w/v))
21reservoirsodium azide1 (mM)
31reservoir50 (mM)
41reservoirmethyl pentanediol8 (%(v/v))
51reservoirsodium phosphate0.1 (M)pH7.3
61dropenzyme18 (mg/ml)
71dropsodium phosphate0.1 (M)pH7.0

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PDB entries from 2024-05-15

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