1KYQ
Met8p: A bifunctional NAD-dependent dehydrogenase and ferrochelatase involved in siroheme synthesis.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-1 |
Synchrotron site | SSRL |
Beamline | BL9-1 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2001-03-30 |
Detector | MARRESEARCH |
Wavelength(s) | 0.97 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 156.988, 80.856, 103.975 |
Unit cell angles | 90.00, 121.88, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.200 |
R-factor | 0.221 * |
Rwork | 0.219 |
R-free | 0.28700 * |
Structure solution method | MAD |
RMSD bond length | 0.007 |
RMSD bond angle | 2.100 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 * | 2.280 |
High resolution limit [Å] | 2.200 * | 2.200 |
Rmerge | 0.070 * | 0.304 |
Total number of observations | 117894 * | |
Number of reflections | 56148 * | |
<I/σ(I)> | 15.7 | 2.9 |
Completeness [%] | 98.0 * | 85.6 * |
Redundancy | 6.1 | 2.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 298 | PEG 4000, CaCl2, Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 7 (mg/ml) | |
2 | 1 | drop | NAD | 2.5 (mM) | |
3 | 1 | reservoir | PEG4000 | 16-18 (%) | |
4 | 1 | reservoir | 0.1 (M) | ||
5 | 1 | reservoir | Tris-HCl | 0.1 (M) | pH8.5 |
6 | 1 | reservoir | dithiothreitol | 2 (mM) |