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1KHV

Crystal Structure of Rabbit Hemorrhagic Disease Virus RNA-dependent RNA polymerase complexed with Lu3+

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-C
Synchrotron siteAPS
Beamline14-BM-C
Temperature [K]100
Detector technologyCCD
Collection date1999-10-05
DetectorADSC QUANTUM 4
Wavelength(s)0.98
Spacegroup nameP 21 21 21
Unit cell lengths70.300, 119.100, 158.700
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.500 - 2.500
R-factor0.218

*

Rwork0.217
R-free0.26800

*

Structure solution methodMAD
RMSD bond length0.007

*

RMSD bond angle1.190

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareREFMAC (5.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]100.000

*

2.640
High resolution limit [Å]2.5002.500
Rmerge0.0390.254
Total number of observations125565

*

Number of reflections42943
<I/σ(I)>13.62.7
Completeness [%]91.482.4
Redundancy2.92.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5298PEG 8000, potassium thiocyanate, L-proline, glycerol, hexanediol, CHAPS, lutetium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein15 (mg/ml)
21reservoirPEG800010-12 (%)
31reservoirTris-Cl0.1 (M)pH7.5
41reservoirsodium thiocyanate0.2 (M)
51reservoirL-proline0.1 (M)
61reservoirglycerol15 (%(w/v))
71reservoir1,6-hexanediol7 (%(v/v))
81reservoirCHAPS0.1 (%(w/v))
91reservoir5 (mM)

219869

PDB entries from 2024-05-15

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