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1KD3

The Crystal Structure of r(GGUCACAGCCC)2, Thallium form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]98
Detector technologyIMAGE PLATE
Collection date2000-05-31
DetectorRIGAKU RAXIS IIC
Wavelength(s)1.5418
Spacegroup nameP 43
Unit cell lengths44.232, 44.232, 49.870
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution21.720 - 1.800
R-factor0.215
Rwork0.215
R-free0.24100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)metal free r(GGUCACAGCCC)2
RMSD bond length0.004
RMSD bond angle11.100

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]99.0001.830
High resolution limit [Å]1.8001.800
Rmerge0.067

*

0.510
Number of reflections9195

*

<I/σ(I)>28.73.7
Completeness [%]99.6

*

99.1

*

Redundancy4.33

*

9.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

7

*

29350 mM tris HCl (pH 6.4), 1.4 M (NH4)2SO4, 20 mM MgCl2, 18 mM spermine, neomycin B, pH 6.4, VAPOR DIFFUSION, HANGING DROP at 293K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111tris HCl
211(NH4)2SO4
311MgCl2
411spermine
511neomycin B
612tris HCl
712(NH4)2SO4
812MgCl2
912spermine
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoircacodylate40 (mM)pH6.5
21reservoirammonium sulfate1.4 (M)
31reservoirspermine12 (mM)
41reservoirthallium acetate80 (mM)
51dropprotein4 (mg/ml)
61dropTris-HCl10 (mM)pH7.0
71drop5 (mM)

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PDB entries from 2024-05-15

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