Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1K8U

CRYSTAL STRUCTURE OF CALCIUM-FREE (OR APO) HUMAN S100A6; CYS3MET MUTANT (SELENOMETHIONINE DERIVATIVE)

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-D
Synchrotron siteAPS
Beamline14-BM-D
Temperature [K]100
Detector technologyCCD
Collection date2000-12-07
DetectorADSC QUANTUM 4
Wavelength(s)1.02046, 0.97997, 0.94286
Spacegroup nameC 2 2 21
Unit cell lengths37.259, 48.113, 83.473
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 1.150
R-factor0.186
Rwork0.186
R-free0.22000

*

Structure solution methodMAD
RMSD bond length0.015
RMSD bond angle2.500
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSHARP
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0001.240
High resolution limit [Å]1.1501.150
Rmerge0.0610.267
Total number of observations399427

*

Number of reflections25856

*

<I/σ(I)>11.7
Completeness [%]88.2

*

87.6
Redundancy14.88
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5

*

20

*

28% PEG 1500, 30mM sodium cacodylate, 6% glycerol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
1VAPOR DIFFUSION, HANGING DROP6.5

*

20

*

28% PEG 1500, 30mM sodium cacodylate, 6% glycerol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
1VAPOR DIFFUSION, HANGING DROP6.5

*

20

*

28% PEG 1500, 30mM sodium cacodylate, 6% glycerol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropsodium cacodylate5 (mM)pH6.5
21dropbeta-mercaptoethanol2.5 (mM)
31dropL-cysteine4 (mM)
41dropEGTA2 (mM)
51dropprotein20 (mg/ml)
61reservoirPEG150028 (%)
71reservoirsodium cacodylate30 (mM)pH7.0
81reservoirglycerol6 (%)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon