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1K0U

Inhibition of S-adenosylhomocysteine Hydrolase by "acyclic sugar" Adenosine Analogue D-eritadenine

Replaces:  1D4G
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]93
Detector technologyIMAGE PLATE
Collection date1999-08-20
DetectorRIGAKU RAXIS IIC
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths89.870, 177.370, 112.160
Unit cell angles90.00, 107.60, 90.00
Refinement procedure
Resolution10.000 - 3.000
R-factor0.183
Rwork0.183
R-free0.26500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1d4f
RMSD bond length0.007
RMSD bond angle25.800

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR
Refinement softwareX-PLOR (3.851)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]10.0003.100
High resolution limit [Å]3.0003.000
Rmerge0.0850.190
Total number of observations241990

*

Number of reflections59048

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<I/σ(I)>6.23.1
Completeness [%]91.5

*

82
Redundancy2.11.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.222

*

PEG 4000, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropsodium D-eritadenine1 (mM)
21dropPEG400022 (%(w/v))
31dropTris-HCl50 (mM)
41dropisopropyl alcohol10 (%(v/v))
51dropprotein10 (mg/ml)

219869

PDB entries from 2024-05-15

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