Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1JV7

BACTERIORHODOPSIN O-LIKE INTERMEDIATE STATE OF THE D85S MUTANT AT 2.25 ANGSTROM RESOLUTION

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
Collection date1998-10-16
DetectorADSC QUANTUM
Wavelength(s)1.0
Spacegroup nameC 2 2 21
Unit cell lengths51.800, 121.300, 85.700
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution12.000 - 2.250
R-factor0.213

*

Rwork0.213
R-free0.24400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1brx
RMSD bond length0.008
RMSD bond angle1.108
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]99.000

*

2.280
High resolution limit [Å]2.2002.250
Rmerge0.0560.553
Total number of observations164767

*

Number of reflections11949
<I/σ(I)>9.62.2
Completeness [%]91.594.7
Redundancy134.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1cubic lipid phase5.620

*

Landau, E.M., (1996) Proc.Natl.Acad.Sci.USA., 93, 14532.

*

1cubic lipid phase5.620

*

Landau, E.M., (1996) Proc.Natl.Acad.Sci.USA., 93, 14532.

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
111sodium potassium Pi3.3 (M)
211protein3.5 (mg/ml)
311methylpentandiol0.05 (%)
411beta-octylglycopyranoside1.2 (%)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon