1JPI
Phe232Leu mutant of human UROD, human uroporphyrinogen III decarboxylase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1999-01-01 |
Detector | RIGAKU RAXIS IV |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 103.320, 103.320, 72.031 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 2.300 |
R-factor | 0.2 * |
Rwork | 0.200 |
R-free | 0.24300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1uro |
RMSD bond length | 0.140 |
RMSD bond angle | 2.140 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR |
Refinement software | X-PLOR (3.843) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.078 | 0.400 * |
Total number of observations | 262230 * | |
Number of reflections | 20018 * | |
Completeness [%] | 99.0 | 99.7 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 * | 21 * | Phillips, J.D., (1997) Protein Sci., 6, 1343. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 6 (mg/ml) | |
2 | 1 | drop | Tris | 50 (mM) | pH7.5 |
3 | 1 | drop | glycerol | 10 (%) | |
4 | 1 | drop | beta-mercaptoethanol | 1 (mM) | |
5 | 1 | reservoir | MPD | 16 (%) | |
6 | 1 | reservoir | MES | 0.1 | pH6.0 |