1JFI
Crystal Structure of the NC2-TBP-DNA Ternary Complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2000-07-02 |
Detector | SBC-2 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 76.684, 119.075, 155.076 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.840 - 2.620 |
R-factor | 0.236 |
Rwork | 0.233 |
R-free | 0.27700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1cdw |
RMSD bond length | 0.006 |
RMSD bond angle | 1.300 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (0.9) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.710 |
High resolution limit [Å] | 2.620 | 2.620 |
Rmerge | 0.058 | 0.312 |
Total number of observations | 562756 * | |
Number of reflections | 21406 | |
<I/σ(I)> | 19.6 | |
Completeness [%] | 98.4 | 91.6 |
Redundancy | 6.7 | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 20 * | PEG 4000, sodium citrate, potassium chloride, magnesium chloride, DTT, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | PEG 4000 | ||
2 | 1 | 1 | sodium citrate | ||
3 | 1 | 1 | KCl | ||
4 | 1 | 1 | MgCl2 | ||
5 | 1 | 1 | DTT |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 0.5 (mM) | |
2 | 1 | reservoir | 100 (mM) | ||
3 | 1 | reservoir | 100 (mM) | ||
4 | 1 | reservoir | 20 (mM) | ||
5 | 1 | reservoir | dithiothreitol | 10 (mM) | |
6 | 1 | reservoir | PEG4000 | 20 (%(w/v)) |