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1JEK

Visna TM CORE STRUCTURE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X4A
Synchrotron siteNSLS
BeamlineX4A
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date1998-12-01
DetectorRIGAKU RAXIS IV
Spacegroup nameP 3 2 1
Unit cell lengths52.548, 52.548, 61.686
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution9.960 - 1.500
R-factor0.213
Rwork0.213
R-free0.26500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2siv
RMSD bond length0.012
RMSD bond angle1.300
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0001.520
High resolution limit [Å]1.5001.500
Rmerge0.0660.259

*

Total number of observations52353

*

Number of reflections16300
<I/σ(I)>13.92.5
Completeness [%]90.164.7
Redundancy7.51.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.529825% tert-butanol, 0.1M TRIS-HCL, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21reservoirtert-butanol25 (%)
31reservoirTris-HCl0.1 (M)

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PDB entries from 2025-06-18

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