1J2E
Crystal structure of Human Dipeptidyl peptidase IV
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 118.040, 125.920, 136.840 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 10.000 - 2.600 |
Rwork | 0.249 |
R-free | 0.30150 * |
Structure solution method | MIR |
RMSD bond length | 0.006 |
RMSD bond angle | 1.305 * |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | MLPHARE |
Refinement software | CNX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 100.000 | 2.740 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.078 | 0.213 |
Total number of observations | 385015 * | |
Number of reflections | 59988 * | |
<I/σ(I)> | 7.5 | 3.5 |
Completeness [%] | 95.0 * | 72.8 |
Redundancy | 6.4 | 4.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.7 * | 293 | Hiramatsu, H., (2003) Acta Cryst., D59, 595. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | Gly-NaOH | 71 (mM) | pH8.7 |
2 | 1 | drop | protein | 20 (mg/ml) | |
3 | 1 | reservoir | Gly-NaOH | 180 (mM) | pH9.5 |
4 | 1 | reservoir | sodium acetate | 180 (mM) | |
5 | 1 | reservoir | PEG4000 | 18 (%) |