Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1IJD

Crystallographic Structure of the LH3 Complex from Rhodopseudomonas acidophila strain 7050

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSRS BEAMLINE PX9.6
Synchrotron siteSRS
BeamlinePX9.6
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date1999-08-29
DetectorMARRESEARCH
Wavelength(s)0.87
Spacegroup nameH 3 2
Unit cell lengths117.260, 117.260, 295.920
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution42.000 - 3.000
R-factor0.243

*

Rwork0.243
R-free0.25600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1KZU (LH2 complex from Rps. acidophila strain 10050)
RMSD bond length0.013

*

RMSD bond angle0.021

*

Data reduction softwareMOSFLM
Data scaling softwareCCP4 ((TRUNCATE))
Phasing softwareAMoRE
Refinement softwareRESTRAIN
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.0002.870
High resolution limit [Å]3.000

*

2.800
Rmerge0.085

*

0.370

*

Number of reflections18970
<I/σ(I)>4.61.3
Completeness [%]97.0

*

96.4

*

Redundancy3.72.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP9.2291McLuskey, K., (1999) Acta Crystallogr., Sect.D, 55, 885.

*

1VAPOR DIFFUSION, SITTING DROP9.2291McLuskey, K., (1999) Acta Crystallogr., Sect.D, 55, 885.

*

1VAPOR DIFFUSION, SITTING DROP9.2291McLuskey, K., (1999) Acta Crystallogr., Sect.D, 55, 885.

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11droppotassium phosphate4.0 (M)pH9.2
21dropbenzamidine hydrochloride2.5 (%(w/v))
31reservoirammonium sulfate2.3 (M)pH9.7

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon