1I8I
CRYSTAL STRUCTURE OF DSFV MR1 IN COMPLEX WITH THE PEPTIDE ANTIGEN OF THE MUTANT EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII, AT ROOM TEMPERATURE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 293 |
Detector technology | AREA DETECTOR |
Collection date | 2000-04-21 |
Detector | MARRESEARCH |
Wavelength(s) | 1.5418 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 111.600, 45.300, 110.400 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 6.000 - 2.400 |
R-factor | 0.173 |
Rwork | 0.156 |
R-free | 0.26200 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.015 * |
RMSD bond angle | 3.300 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MERLOT |
Refinement software | X-PLOR |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 6.000 | 2.480 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.060 | 0.115 |
Total number of observations | 10214 * | |
Number of reflections | 9684 * | |
<I/σ(I)> | 16.2 | |
Completeness [%] | 86.6 * | 58.6 * |
Redundancy | 2.6 | 2.46 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 18 * | sodium chloride, MPD, PEG 10K, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | peptide | 4 (mg/ml) | |
2 | 1 | drop | ADA buffer | 40 (mM) | pH7.0 |
3 | 1 | drop | 25 (mM) | ||
4 | 1 | drop | MPD | 1 (%(w/v)) | |
5 | 1 | drop | PEG10000 | 6 (%(w/v)) | |
6 | 1 | reservoir | ADA buffer | 200 (mM) | pH7.0 |
7 | 1 | reservoir | MPD | 2-3 (%) | |
8 | 1 | reservoir | PEG4000 | 16 (%) |