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1I8D

CRYSTAL STRUCTURE OF RIBOFLAVIN SYNTHASE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 5ID-B
Synchrotron siteAPS
Beamline5ID-B
Temperature [K]93
Detector technologyCCD
Collection date1999-01-01
DetectorMARRESEARCH
Wavelength(s)1.1271
Spacegroup nameP 21 21 21
Unit cell lengths52.083, 61.705, 219.781
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.000 - 2.000
R-factor0.239

*

Rwork0.239
R-free0.29900
Structure solution methodMAD
RMSD bond length0.009
RMSD bond angle1.990
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSHARP
Refinement softwareTNT (5E)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0002.040
High resolution limit [Å]2.0002.000
Rmerge0.0640.215
Total number of observations437196

*

Number of reflections48686

*

<I/σ(I)>33.7
Completeness [%]99.296.7
Redundancy95
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, sitting drop

*

7.522

*

bis-tris propane, MgCl2, diglyme, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein14 (mg/ml)or Se-Met-labeled RS
21dropTris-HCl50 (mM)
31reservoirdiglyme7-10 (%)
41reservoirBis-Tris propane-NaOH25 (mM)
51reservoir20-50 (mM)

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PDB entries from 2025-12-03

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