1I3M
MOLECULAR BASIS FOR SEVERE EPIMERASE-DEFICIENCY GALACTOSEMIA: X-RAY STRUCTURE OF THE HUMAN V94M-SUBSTITUTED UDP-GALACTOSE 4-EPIMERASE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2000-01-01 |
Detector | SBC-2 |
Wavelength(s) | 1.0332 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 77.900, 89.900, 96.900 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 * - 1.500 |
R-factor | 0.185 |
Rwork | 0.184 |
R-free | 0.21400 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 1ek6 |
RMSD bond length | 0.012 |
RMSD bond angle | 2.140 |
Data reduction software | d*TREK |
Data scaling software | HKL-2000 |
Phasing software | TNT |
Refinement software | TNT |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.550 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.058 | 0.276 |
Total number of observations | 107985 * | |
Number of reflections | 9535 * | |
<I/σ(I)> | 34.4 | 2.5 |
Completeness [%] | 98.4 | 88 |
Redundancy | 6.4 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Batch method * | 6 | 4 * | used macroseeding * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | 1 | MES | 100 (mM) | |
2 | 1 | 1 | PEG3400 | 8-9 (%(w/v)) | |
3 | 1 | 1 | 75 (mM) | ||
4 | 1 | 1 | protein | 15 (mg/ml) | |
5 | 1 | 1 | NADH | 5 (mM) | |
6 | 1 | 1 | UDP-sugars | 20 (mM) |