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1H8N

Three-dimensional structure of anti-ampicillin single chain Fv fragment from phage-displayed murine antibody libraries

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID2
Synchrotron siteESRF
BeamlineID2
Temperature [K]100
Spacegroup nameP 41 21 2
Unit cell lengths61.136, 61.136, 135.646
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution18.000 - 1.870
R-factor0.233
Rwork0.233
R-free0.27600
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.013
RMSD bond angle27.700

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (0.5)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.900
High resolution limit [Å]1.8501.850
Rmerge0.082

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0.275

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Total number of observations303033

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Number of reflections20522
<I/σ(I)>2
Completeness [%]98.898.8

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Redundancy32.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

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5.8

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20

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pH 4.50
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein2.85 (mg/ml)
21reservoirammonium sulfate1.9-2.0 (M)
31reservoirsodium acetate100 (mM)pH5.8
41reservoir1,2,3-heptanetriol1.5 (%(v/v))

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PDB entries from 2024-05-15

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