1GZP
CD1b in complex with GM2 ganglioside
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-2 |
Synchrotron site | ESRF |
Beamline | ID14-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2001-10-15 |
Detector | ADSC CCD |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 87.527, 176.885, 75.250 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 100.000 * - 2.800 |
R-factor | 0.225 |
Rwork | 0.225 |
R-free | 0.27400 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1cd1 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.620 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 100.000 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.103 | 0.325 |
Total number of observations | 89500 * | |
Number of reflections | 13203 * | |
<I/σ(I)> | 13.7 | 1.8 |
Completeness [%] | 88.8 * | 71.1 |
Redundancy | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 7.1 | 20 * | 20 DEGREE C 2UL OF PROTEIN + 1UL OF MOTHER LIQUOR 0.2M LITHIUM NITRATE 20% W/V POLYETHYLENE GLYCOL 3350, PH 7.1 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | lithium nitrate | 0.2 (M) | |
2 | 1 | reservoir | PEG3350 | 20 (%(w/v)) | pH7.1 |
3 | 1 | drop | protein | 5 (mg/ml) |