1GMY
Cathepsin B complexed with dipeptidyl nitrile inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RUH2R |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1995-04-15 |
Detector | RIGAKU IMAGE PLATE |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 103.900, 103.900, 125.600 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 18.000 - 1.900 |
Rwork | 0.161 |
R-free | 0.19800 * |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 * |
RMSD bond angle | 23.700 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR |
Refinement software | CNX (2000) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 18.000 | 2.020 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.056 | 0.305 |
Number of reflections | 62967 * | 10318 * |
<I/σ(I)> | 12.2 | 3.7 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 7.3 | 6.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 5.5 | 4 * | pH 5.50 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
2 | 1 | reservoir | sodium acetate | 50 (ml) | pH5.5 |
3 | 1 | reservoir | 100 (mM) | ||
4 | 1 | reservoir | PEG5000 MME | 15-20 (%) |